创刊20周年 | Genome Biology出版了哪些重要文章？

海归学者发起的公益学术平台

分享信息，整合资源

交流学术，偶尔风月

创刊20年来，Genome Biology 已经成为该领域中排名最高的开放获取期刊，5年影响因子（5 year IF）从1.45到19.04，累计发文量达6800余篇，篇均引用60余次，累计阅读近3千万次。

从2000到2020，是Genome Biology 的20年，也是基因组学的20年。值此特殊时刻，我们挑选出了过去20年来发表在该期刊上的20篇重要文献，来邀请您一同回顾Genome Biology 的二十年，并希望能在未来接收到来自您的稿件。

20周年精选文献回顾

1

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

Research Published on

18 June 2002

Jo Vandesompele, Katleen De Preter, Filip Pattyn, Bruce Poppe, Nadine Van Roy, Anne De Paepe and Frank Speleman

2

DAVID: Database for Annotation, Visualization, and Integrated Discovery

Software Published on

14 August 2003

Glynn Dennis Jr, Brad T Sherman, Douglas A Hosack, Jun Yang, Wei Gao, H Clifford Lane and Richard A Lempicki

3

MicroRNA targets in Drosophila

Research Published on

12 December 2003

Anton J Enright, Bino John, Ulrike Gaul, Thomas Tuschl, Chris Sander and Debora S Marks

4

Bioconductor: open software development for computational biology and bioinformatics

Method Published on

15 September 2004

Robert C Gentleman, Vincent J Carey, Douglas M Bates, Ben Bolstad, Marcel Dettling, Sandrine Dudoit, Byron Ellis, Laurent Gautier, Yongchao Ge, Jeff Gentry, Kurt Hornik, Torsten Hothorn, Wolfgang Huber, Stefano Iacus, Rafael Irizarry, Friedrich Leisch…

5

Model-based Analysis of ChIP-Seq (MACS)

Method Published on

17 September 2008

Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li and X Shirley Liu

6

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Software Published on

4 March 2009

Ben Langmead, Cole Trapnell, Mihai Pop and Steven L Salzberg

7

A whole-genome assembly of the domestic cow, Bos taurus

Research Published on

24 April 2009

Aleksey V Zimin, Arthur L Delcher, Liliana Florea, David R Kelley, Michael C Schatz, Daniela Puiu, Finnian Hanrahan, Geo Pertea, Curtis P Van Tassell, Tad S Sonstegard, Guillaume Marçais, Michael Roberts, Poorani Subramanian, James A Yorke and Steven L Salzberg

8

Differential expression analysis for sequence count data

Method Published on

27 October 2010

Simon Anders and Wolfgang Huber

9

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development

Research Published on

19 August 2011

Marilyn B Renfree, Anthony T Papenfuss, Janine E Deakin, James Lindsay, Thomas Heider, Katherine Belov, Willem Rens, Paul D Waters, Elizabeth A Pharo, Geoff Shaw, Emily SW Wong, Christophe M Lefèvre, Kevin R Nicholas, Yoko Kuroki, Matthew J Wakefield, Kyall R Zenger…

10

The draft genome and transcriptome of Cannabis sativa

Research Published on

20 October 2011

Harm van Bakel, Jake M Stout, Atina G Cote, Carling M Tallon, Andrew G Sharpe, Timothy R Hughes and Jonathan E Page

11

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Method Published on

25 April 2013

Daehwan Kim, Geo Pertea, Cole Trapnell, Harold Pimentel, Ryan Kelley and Steven L Salzberg

12

DNA methylation age of human tissues and cell types

Study Published on

10 December 2013

Steve Horvath

13

The Kardashian index: a measure of discrepant social media profile for scientists

Comment Published on

30 July 2014

Neil Hall

14

Deletions of chromosomal regulatory boundaries are associated with congenital disease

Research Published on

4 September 2014

Jonas Ibn-Salem, Sebastian Köhler, Michael I Love, Ho-Ryun Chung, Ni Huang, Matthew E Hurles, Melissa Haendel, Nicole L Washington, Damian Smedley, Christopher J Mungall, Suzanna E Lewis, Claus-Eric Ott, Sebastian Bauer, Paul N Schofield, Stefan Mundlos, Malte Spielmann…

15

DNA methylation age of blood predicts all-cause mortality in later life

Research Published on

30 January 2015

Riccardo E Marioni, Sonia Shah, Allan F McRae, Brian H Chen, Elena Colicino, Sarah E Harris, Jude Gibson, Anjali K Henders, Paul Redmond, Simon R Cox, Alison Pattie, Janie Corley, Lee Murphy, Nicholas G Martin, Grant W Montgomery, Andrew P Feinberg…

16

A survey of best practices for RNA-seq data analysis

Review Published on

26 January 2016

Ana Conesa, Pedro Madrigal, Sonia Tarazona, David Gomez-Cabrero, Alejandra Cervera, Andrew McPherson, Michał Wojciech Szcześniak, Daniel J. Gaffney, Laura L. Elo, Xuegong Zhang and Ali Mortazavi

17

Easi-CRISPR: a robust method for one-step generation of mice carrying conditional and insertion alleles using long ssDNA donors and CRISPR ribonucleoproteins

Research Published on

17 May 2017

Rolen M. Quadros, Hiromi Miura, Donald W. Harms, Hisako Akatsuka, Takehito Sato, Tomomi Aida, Ronald Redder, Guy P. Richardson, Yutaka Inagaki, Daisuke Sakai, Shannon M. Buckley, Parthasarathy Seshacharyulu, Surinder K. Batra, Mark A. Behlke, Sarah A. Zeiner, Ashley M. Jacobi…

18

SCANPY: large-scale single-cell gene expression data analysis

Software Published on

6 February 2018

F. Alexander Wolf, Philipp Angerer and Fabian J. Theis

19

The somatic mutation landscape of the human body

Research Published on

24 December 2019

Pablo E. García-Nieto, Ashby J. Morrison and Hunter B. Fraser

20

Hi-D: nanoscale mapping of nuclear dynamics in single living cells

Method Published on

20 April 2020

Haitham A. Shaban, Roman Barth, Ludmila Recoules and Kerstin Bystricky

除了以上20篇精彩内容，今年BMC还推出了【BMC前沿视角】系列内容，邀请编委们及作者们分享科学解读。欢迎点击下方图片浏览来自Genome Biology编委团队的精彩点评：

试试向BMC微信公众号回复【Genome Biology】，一键获取2020年我们发表过的精彩中文解析。

8月30日前，在评论区分享您印象最深的Genome Biology 文章，就有机会获得BMC纪念小鼠公仔一只、纪念小风扇一台、Nature杂志一本。

点击“阅读原文”访问Genome Biology创刊20周年纪念页面。

扩展阅读

 

本文系网易新闻·网易号“各有态度”特色内容

媒体转载联系授权请看下方