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联川生物 2022-05-21

联川用户11月发表用户文章共8篇,研究涉及多个领域,运用的技术包括RNA-seq、miRNA测序、降解组测序、转录组测序、phasiRNA分析等。

让我们一起回顾11月联川科研客户取得的新突破。



1


小麦miR9678通过生成PhasiRNA及调控脱落酸/赤霉素信号来影响种子萌发

Wheat miR9678 Affects Seed Germination by Generating Phased siRNAs and Modulating Abscisic Acid/Gibberellin Signaling

发表单位:中国农业大学

发表期刊:Plant Cell

影响因子:8.228

技术手段:RNA-Seq,降解组测序,PhasiRNA分析



2


小RNA介导的基因沉默中miRNA介导产生长链非编码基因的phasiRNA与可变剪接和可变多聚腺苷酸化的耦合

Coupling of microRNA-directed phased small interfering RNA generation from long noncoding genes with alternative splicing and alternative polyadenylation in small RNA-mediated gene Silencing

发表单位:华南农业大学

发表期刊:New Phytologist

影响因子:7.433

技术手段:miRNA测序,降解组测序,转录组测序,phasiRNA分析



3


用于植物中miRNA和siRNA功能分析的病毒卫星DNA载体(TYLCCNV)

A Viral Satellite DNA Vector (TYLCCNV) for Functional Analysis of miRNAs and siRNAs in Plants

发表单位:中国农业大学

发表期刊:Plant Physiology

影响因子:5.949

技术手段:miRNA测序,降解组测序



4


LncRNA33732参与了番茄与致病疫霉菌互作的RESPIRATORY BURST OXIDASE模块中对WRKY1相关调控

LncRNA33732-RESPIRATORY BURST OXIDASE module associated with WRKY1 in tomato- Phytophthora infestans interactions

发表单位:大连理工大学

发表期刊:Plant Journal

影响因子:5.775

技术手段:RNA-seq



5


感染环形泰勒虫的白细胞胞外囊泡中与感染相关microRNA和蛋白质负荷的表征

Characterisation of infection associated microRNA and protein cargo in extracellular vesicles of Theileria annulata infected leukocytes

发表单位:格拉斯哥大学

发表期刊:Cellular Microbiology

影响因子:4.410

技术手段:miRNA测序



6


Lhx1-Ldb1复合物与Furry因子相互作用以调节肾脏发育过程中的microRNA表达

The Lhx1-Ldb1 complex interacts with Furry to regulate microRNA expression during pronephric kidney development

发表单位:布宜诺斯艾利斯大学

发表期刊:Scientific Reports

影响因子:4.122

技术手段:miRNA测序



7


利用转录组分析鉴定新的肝细胞癌生物标志物

Identification of novel biomarkers for hepatocellular carcinoma using transcriptome analysis

发表单位:复旦大学

发表期刊:J Cell Physiol

影响因子:3.923

技术手段:转录组测序



8


利用测序技术鉴定和比较分析大口黑鲈的四种组织的miRNA表达谱

Identification and comparative analysis of the miRNA expression profiles from four tissues of Micropterus salmoides using deep sequencing

发表单位:河南科技大学

发表期刊:Genomics

影响因子:2.910

技术手段:miRNA测序


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参考文献

1. Guo G, et al. 2018. Wheat miR9678 Affects Seed Germination by Generating Phased siRNAs and Modulating Abscisic Acid/Gibberellin Signaling. Plant Cell(30): 796-814.

2. Wuqiang Ma,Chengjie Chen,Yuanlong Liu,Ming Zeng,Blake C. Meyers,Jianguo Li,Rui Xia(2018)Coupling of microRNA-directed phased small interfering RNA generation from long noncoding genes with alternative splicing and alternative polyadenylation in small RNA-mediated gene Silencing . New Phytologist.

3. Ju, Z., Cao, D., Gao, C., Zuo, J., Zhai, B., Li, S., … Zhu, B. (2017). A Viral Satellite DNA Vector (TYLCCNV) for Functional Analysis of miRNAs and siRNAs in Plants. Plant Physiology, 173(4), 1940–1952. doi:10.1104/pp.16.01489

4. Cui, J., Jiang, N., Meng, J., Yang, G., Liu, W., Zhou, X., … Luan, Y. (2018). LncRNA33732-RESPIRATORY BURST OXIDASE module associated with WRKY1 in tomato- Phytophthora infestans interactions. The Plant Journal. doi:10.1111/tpj.14173

5. V Gillan, DM Simpson, J Kinnaird, K Maitland, B Shiels et al. (2018) Characterisation of infection associated microRNA and protein cargo in extracellular vesicles of Theileria annulata infected leukocytes Cellular Microbiology doi: 10.1111/cmi.12969

6. EB Espiritu, AE Crunk, A Bais, D Hochbaum et al. (2018) The Lhx1-Ldb1 complex interacts with Furry to regulate microRNA expression during pronephric kidney development Scientific Reports doi: 10.1038/s41598-018-34038-x

7. Xia Q, Li Z, Zheng J, Zhang X, Di Y, Ding J, Yu D, Yan L, Shen L, Yan D, Jia N, Chen W, Feng Y, Wang J. (2018) Identification of novel biomarkers for hepatocellular carcinoma using transcriptome analysis. J Cell Physiol [Epub ahead of print].

8. W Gong, Y Huang, J Xie, G Wang, D Yu, K Zhang, Z Li et al. (2018) Identification and comparative analysis of the miRNA expression profiles from four tissues of Micropterus salmoides using deep sequencing Genomics doi: 10.1016/j.ygeno.2018.09.017


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